Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs12700228 chr7:20711159 A/G 5.16E-5 491 24.27 21.27 13.27 KM Plot
LGG rs12761180 chr10:872086 C/T 3.9E-6 508 21.7 25.18 14.43 KM Plot
LGG rs12761424 chr10:967295 C/T 9.97E-5 506 23.53 22.55 14.65 KM Plot
LGG rs12762228 chr10:880854 G/A 3.91E-6 508 21.7 25.18 14.43 KM Plot
LGG rs12763396 chr10:927357 C/A 5.39E-8 508 21.85 24.15 14.15 KM Plot
LGG rs12764024 chr10:922861 A/G 1.11E-6 497 21.85 24.52 14.5 KM Plot
LGG rs12765174 chr10:946974 T/C 3.37E-7 506 21.77 24.23 14.43 KM Plot
LGG rs12766381 chr10:909429 G/T 2.84E-8 504 21.85 24.37 14.15 KM Plot
LGG rs12768348 chr10:899224 T/G 2.31E-7 506 21.7 25.83 14.15 KM Plot
LGG rs12769002 chr10:927666 C/G 5.67E-7 509 14.5 24.38 21.7 KM Plot
LGG rs12769431 chr10:922633 T/C 5.88E-11 504 21.87 24.52 13.8 KM Plot
LGG rs12769873 chr10:936526 G/T 5.0E-7 507 21.87 24.23 14.43 KM Plot
LGG rs12770190 chr10:951262 C/T 9.44E-6 487 22.57 24.07 14.5 KM Plot
LGG rs12771123 chr10:50374318 A/G 6.37E-5 491 20.9 25.33 23.83 KM Plot
LGG rs12771179 chr10:872347 A/G 3.92E-6 508 21.7 25.83 14.43 KM Plot